TDR Targets

Basic information

Technical information

TDR Targets ID: 1611147
Name: (Z)-3-[(2R,3S,4S,5S)-3,4-dihydroxy-2,4,5-trim ethyloxolan-2-yl]-2-methylprop-2-enal
MW: 214.258 | Formula: C11H18O4
H donors: 2 H acceptors: 3 LogP: -0.41 Rotable bonds: 2
Rule of 5 violations (Lipinski): 1
SMILES: O=C/C(=C\[C@@]1(C)O[C@H]([C@@]([C@@H]1O)(C)O)C)/C
InChi: 1S/C11H18O4/c1-7(6-12)5-10(3)9(13)11(4,14)8(2)15-10/h5-6,8-9,13-14H,1-4H3/b7-5-/t8-,9+,10+,11+/m0/s1
InChiKey: YDZGIHHZMNNFMM-URCWOFHRSA-N

Network

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Target Layer

Model Organisms

Species	Viewmode
Arabidopsis thaliana
Caenorhabditis elegans
Dictyostelium discoideum
Drosophila melanogaster
Escherichia coli
Homo sapiens
Mus musculus
Oryza sativa
Saccharomyces cerevisiae
Schmidtea mediterranea
Other organisms

TDR Pathogens:

Species	Viewmode
Brugia malayi
Chlamydia trachomatis
Echinococcus granulosus
Entamoeba histolytica
Echinococcus multilocularis
Giardia lamblia
Leishmania major
Loa Loa (eye worm)
Mycobacterium leprae
Mycobacterium tuberculosis
Mycobacterium ulcerans
Onchocerca volvulus
Plasmodium falciparum
Plasmodium vivax
Schistosoma mansoni
Trypanosoma brucei
Trypanosoma cruzi
Toxoplasma gondii
Treponema pallidum
Trichomonas vaginalis
Wolbachia endosymbiont of Brugia malayi

Other Pathogens:

Species	Viewmode
Babesia bovis
Candida albicans
Cryptosporidium hominis
Cryptosporidium parvum
Leishmania braziliensis
Leishmania donovani
Leishmania infantum
Leishmania mexicana
Neospora caninum
Plasmodium berghei
Plasmodium knowlesi
Plasmodium yoelii
Schistosoma japonicum
Trypanosoma brucei gambiense
Trypanosoma congolense
Theileria parva

Compound Layer

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Clustering layers

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Synonyms

(Z)-3-[(2R,3S,4S,5S)-3,4-dihydroxy-2,4,5-trimethyl-tetrahydrofuran-2-yl]-2-methyl-prop-2-enal
(Z)-3-[(2R,3S,4S,5S)-3,4-dihydroxy-2,4,5-trimethyl-2-tetrahydrofuranyl]-2-methylprop-2-enal
(Z)-3-[(2R,3S,4S,5S)-3,4-dihydroxy-2,4,5-trimethyl-tetrahydrofuran-2-yl]-2-methyl-acrolein
(Z)-3-[(2R,3S,4S,5S)-3,4-dihydroxy-2,4,5-trimethyl-oxolan-2-yl]-2-methyl-prop-2-enal
NSC715496

Targets

Known targets for this compound

No curated genes were found associated with this compound

Predicted pathogen targets for this compound

By orthology

No druggable targets predicted by orthology data

By sequence similarity to non orthologous known druggable targets

No druggable targets predicted by sequence similarity

Ranking Plot

Putative Targets List

Species	Potential target	Raw	Global	Species
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Brugia malayi	Temporarily assigned gene name protein 59	0.0929	0.2913	0.2913
Trypanosoma cruzi	Vacuolar sorting protein 39 domain 1/Vacuolar sorting protein 39 domain 2, putative	0.0929	0.2913	1
Schistosoma mansoni	serine/threonine protein kinase	0.094	0.2949	0.2949
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0036	0.0066	0.6922
Schistosoma mansoni	microtubule-associated protein tau	0.069	0.2151	0.2151
Loa Loa (eye worm)	phosphatidylinositol 3	0.0045	0.0095	0.0096
Schistosoma mansoni	cellular tumor antigen P53	0.0049	0.011	0.011
Echinococcus granulosus	serine:threonine protein kinase mig 15	0.3141	0.9964	1
Schistosoma mansoni	tar DNA-binding protein	0.0063	0.0154	0.0154
Echinococcus multilocularis	tumor protein p63	0.0338	0.1029	0.1462
Trypanosoma brucei	phosphatidylinositol 3-kinase tor, putative	0.0021	0.002	0.0068
Echinococcus multilocularis	GTPase activating Rap:RanGAP domain 3	0.0929	0.2913	0.4138
Schistosoma mansoni	serine/threonine protein kinase	0.094	0.2949	0.2949
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0027	0.0037	0.3855
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0027	0.0037	0.3855
Loa Loa (eye worm)	hypothetical protein	0.0929	0.2913	0.2923
Echinococcus multilocularis	mitogen activated protein kinase kinase kinase	0.094	0.2949	0.4189
Entamoeba histolytica	phosphatidylinositol3-kinaseTor2, putative	0.0045	0.0095	0.5
Loa Loa (eye worm)	RNA recognition domain-containing protein domain-containing protein	0.0063	0.0154	0.0154
Loa Loa (eye worm)	hypothetical protein	0.0929	0.2913	0.2923
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0036	0.0066	0.6922
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor1	0.0045	0.0095	0.0327
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0045	0.0095	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0036	0.0066	0.6922
Schistosoma mansoni	ataxia telangiectasia mutated (atm)-related	0.0045	0.0095	0.0095
Trypanosoma brucei	Vacuolar sorting protein 39 domain 1/Vacuolar sorting protein 39 domain 2, putative	0.0929	0.2913	1
Schistosoma mansoni	rap gtpase-activating protein	0.0929	0.2913	0.2913
Echinococcus granulosus	Serine/threonine-protein kinase Genghis Khan	0.094	0.2949	0.296
Toxoplasma gondii	target of rapamycin (TOR), putative	0.0033	0.0058	0.5
Schistosoma mansoni	hypothetical protein	0.0929	0.2913	0.2913
Echinococcus granulosus	tumor protein p63	0.0338	0.1029	0.1033
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3066
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3078
Schistosoma mansoni	tar DNA-binding protein	0.0063	0.0154	0.0154
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0027	0.0038	0.3945
Brugia malayi	Protein kinase domain containing protein	0.094	0.2949	0.2949
Echinococcus multilocularis	mitogen activated protein kinase kinase kinase	0.094	0.2949	0.4189
Schistosoma mansoni	protein kinase	0.094	0.2949	0.2949
Echinococcus multilocularis	FKBP12 rapamycin complex associated protein	0.0045	0.0095	0.0135
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3078
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Loa Loa (eye worm)	RNA binding protein	0.0063	0.0154	0.0154
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Loa Loa (eye worm)	hypothetical protein	0.3141	0.9964	1
Echinococcus multilocularis		0.2224	0.7039	1
Schistosoma mansoni	tar DNA-binding protein	0.0063	0.0154	0.0154
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0045	0.0095	1
Brugia malayi	hypothetical protein	0.0929	0.2913	0.2913
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0027	0.0038	0.3945
Loa Loa (eye worm)	STE/STE20/MSN protein kinase	0.2224	0.7039	0.7065
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3066
Loa Loa (eye worm)	MH2 domain-containing protein	0.0119	0.0332	0.0334
Trypanosoma cruzi	target of rapamycin kinase 3	0.0036	0.0066	0.0227
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3078
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Schistosoma mansoni	mitogen-activated protein kinase kinase kinase 3 mapkkk3 mekk3	0.0929	0.2913	0.2913
Schistosoma mansoni	protein kinase	0.3153	1	1
Loa Loa (eye worm)	hypothetical protein	0.0049	0.011	0.011
Echinococcus granulosus	Vam6:Vps39 protein	0.0929	0.2913	0.2923
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Echinococcus granulosus	protein kinase	0.2224	0.7039	0.7065
Brugia malayi	RNA recognition motif domain containing protein	0.0063	0.0154	0.0154
Schistosoma mansoni	mitogen-activated protein kinase kinase kinase 3 mapkkk3 mekk3	0.0929	0.2913	0.2913
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0029	0.0045	0.4722
Leishmania major	target of rapamycin (TOR) kinase 1, putative	0.0045	0.0095	1
Entamoeba histolytica	FKBP-rapamycin associated protein (FRAP), putative	0.0045	0.0095	0.5
Echinococcus granulosus	mitogen activated protein kinase kinase kinase	0.094	0.2949	0.296
Brugia malayi	TAR-binding protein	0.0063	0.0154	0.0154
Brugia malayi	MH2 domain containing protein	0.0119	0.0332	0.0332
Trypanosoma cruzi	Phosphatidylinositol 3-kinase tor2	0.0045	0.0095	0.0327
Trypanosoma brucei	phosphatidylinositol 4-kinase, putative	0.0045	0.0095	0.0327
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Echinococcus multilocularis	tar DNA binding protein	0.0063	0.0154	0.0219
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3078
Trypanosoma brucei	FAT domain/Rapamycin binding domain/Phosphatidylinositol 3- and 4-kinase, putative	0.0019	0.0011	0.0039
Leishmania major	target of rapamycin (TOR) kinase 2, putative	0.0045	0.0095	1
Trypanosoma cruzi	Vacuolar sorting protein 39 domain 1/Vacuolar sorting protein 39 domain 2, putative	0.0929	0.2913	1
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0033	0.0058	0.6145
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0036	0.0066	0.6922
Echinococcus granulosus	microtubule associated protein 2	0.069	0.2151	0.2159
Schistosoma mansoni	vam6/vps39 related	0.0929	0.2913	0.2913
Echinococcus granulosus	tar DNA binding protein	0.0063	0.0154	0.0154
Echinococcus granulosus	FKBP12 rapamycin complex associated protein	0.0045	0.0095	0.0096
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0038	0.0074	0.78
Giardia lamblia	GTOR	0.0045	0.0095	0.5
Echinococcus granulosus	mitogen activated protein kinase kinase kinase	0.094	0.2949	0.296
Trypanosoma brucei	Phosphatidylinositol 3-kinase tor1	0.0045	0.0095	0.0327
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0027	0.0038	0.3945
Brugia malayi	RNA binding protein	0.0063	0.0154	0.0154
Leishmania major	target of rapamycin kinase (TOR) kinase 3	0.0036	0.0066	0.6934
Schistosoma mansoni	tar DNA-binding protein	0.0063	0.0154	0.0154
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0036	0.0066	0.6922
Echinococcus multilocularis	serine:threonine protein kinase MRCK beta	0.094	0.2949	0.4189
Schistosoma mansoni	protein kinase	0.2224	0.7039	0.7039
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0045	0.0095	1
Brugia malayi	Phosphatidylinositol 3- and 4-kinase family protein	0.0045	0.0095	0.0095
Loa Loa (eye worm)	transcription factor SMAD2	0.0119	0.0332	0.0334
Loa Loa (eye worm)	hypothetical protein	0.0929	0.2913	0.2923
Echinococcus granulosus	GTPase activating Rap:RanGAP domain 3	0.0929	0.2913	0.2923
Trichomonas vaginalis	PIKK family atypical protein kinase	0.0024	0.0029	0.3066
Echinococcus multilocularis	microtubule associated protein 2	0.069	0.2151	0.3056
Schistosoma mansoni	tar DNA-binding protein	0.0063	0.0154	0.0154
Loa Loa (eye worm)	TAR-binding protein	0.0063	0.0154	0.0154
Trichomonas vaginalis	PIKK family atypical protein kinase	0.003	0.0048	0.5047
Trypanosoma brucei	target of rapamycin kinase 3, putative	0.0036	0.0066	0.0227
Loa Loa (eye worm)	STE/STE20/KHS protein kinase	0.094	0.2949	0.296
Onchocerca volvulus		0.0929	0.2913	1

Activities

Activity type	Activity value	Assay description	Source	Reference
GI50 (functional)	-5.887	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the UO-31 Renal cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.61	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the ACHN Renal cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.488	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the SN12C Renal cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.478	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the NCI-H23 Non-Small Cell Lung cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.43	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the HOP-92 Non-Small Cell Lung cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.396	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the SF-539 Central Nervous System cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.354	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the MDA-N Breast cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.284	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the MALME-3M Melanoma cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4.103	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the DU-145 Prostate cell line. (Class of assay: confirmatory)	ChEMBL.	No reference
GI50 (functional)	-4	PUBCHEM_BIOASSAY: NCI human tumor cell line growth inhibition assay. Data for the HL-60(TB) Leukemia cell line. (Class of assay: confirmatory)	ChEMBL.	No reference

Phenotypes

Whole-cell/tissue/organism interactions

We have no records of whole-cell/tissue assays done with this compound What does this mean?

Many chemical entities in TDR Targets come from high-throughput screenings with whole cells or tissue samples, and not all assayed compounds have been tested against a single a single target protein, probably because they get ruled out during screening process. Even if these compounds may have not been of interest in the original screening, they may come as interesting leads for other screening assays. Furthermore, we may be able to propose drug-target associations using chemical similarities and network patterns.

Annotated phenotypes:

We have no manually annotated phenotypes for this drug. What does this mean? / Care to help?

In TDR Targets, information about phenotypes that are caused by drugs, or by genetic manipulation of cells (e.g. gene knockouts or knockdowns) is manually curated from the literature. These descriptions help to describe the potential of the target for drug development. If no information is available for this gene or if the information is incomplete, this may mean that i) the papers containing this information either appeared after the curation effort for this organism was carried out or they were inadvertently missed by curators; or that ii) the curation effort for this organism has not yet started.

In any case, if you have information about papers containing relevant validation data for this target, please log in using your TDR Targets username and password and send them to us using the corresponding form in this page (only visible to registered users) or contact us.

External resources for this compound

ChEMBL: CHEMBL1973445

Bibliographic References

No literature references available for this target.

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Detailed information for compound 1611147