Saccharomyces cerevisiae (budding yeast): YER165W
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Entry
YER165W CDS
T00005
Symbol
PAB1
Name
(RefSeq) polyadenylate-binding protein
KO
K13126
polyadenylate-binding protein
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03015
mRNA surveillance pathway
sce03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
YER165W (PAB1)
09123 Folding, sorting and degradation
03018 RNA degradation
YER165W (PAB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sce03019
]
YER165W (PAB1)
03041 Spliceosome [BR:
sce03041
]
YER165W (PAB1)
Messenger RNA biogenesis [BR:
sce03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
YER165W (PAB1)
mRNA cycle factors
Stress granule specific factors
YER165W (PAB1)
Spliceosome [BR:
sce03041
]
Complex C
Other components
Complex C specific factors
YER165W (PAB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
856912
NCBI-ProteinID:
NP_011092
SGD:
S000000967
UniProt:
P04147
Structure
PDB
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All DBs
Position
V:510373..512106
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AA seq
577 aa
AA seq
DB search
MADITDKTAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSP
IGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSL
RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAK
EAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA
KFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER
MHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK
SKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQ
QATAAAAAAAAGMPGQFMPPMFYGVMPPRGVPFNGPNPQQMNPMGGMPKNGMPPQFRNGP
VYGVPPQGGFPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQ
EVFPLLESDELFEQHYKEASAAYESFKKEQEQQTEQA
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggctgatattactgataagacagctgaacaattggaaaacttgaatattcaagatgac
caaaagcaagccgccactggttcagaaagccaatctgttgaaaactcttctgcatcatta
tatgttggtgacttagaaccttctgtttccgaagcccacttatatgatatcttctctcca
atcggttcagtctcctccattcgtgtctgtcgtgatgccatcactaagacctctttgggc
tatgcttatgttaactttaacgaccatgaagccggcagaaaagcaattgagcaattgaac
tacactccaatcaagggtagattatgccgtattatgtggtctcaacgtgacccatcattg
agaaagaagggttctggtaacatctttatcaagaacttgcaccctgatattgacaacaag
gctttgtatgacactttctctgtgtttggtgacatcttgtccagcaagattgccaccgac
gaaaacggaaaatccaagggttttgggtttgttcacttcgaagaagaaggtgctgccaag
gaagctattgatgctttgaatggtatgctgttgaacggtcaagaaatttatgttgctcct
cacttgtccagaaaggaacgtgactctcaattggaagagactaaggcacattacactaac
ctttatgtgaaaaacatcaactccgaaactactgacgaacaattccaagaattgtttgcc
aaatttggtccaattgtttctgcctctttggaaaaggatgctgatggaaaattgaagggt
ttcgggtttgttaactacgaaaagcatgaagacgctgtgaaagctgttgaagctttgaat
gactctgaactaaatggagaaaagttatacgttggtcgtgcccaaaagaagaatgaacgt
atgcatgtcttgaagaagcaatacgaagcttacagattggaaaaaatggccaagtaccaa
ggtgttaatttgtttgttaagaacttagatgacagcgttgatgacgaaaagttggaagaa
gaatttgctccatatggtactatcacttctgcaaaggttatgagaaccgaaaacggtaag
tctaagggttttggttttgtttgtttctcaactccagaggaagctactaaggccattaca
gaaaagaaccaacaaattgttgctggtaagccattatacgttgccattgctcaaagaaaa
gacgtaagacgttctcaattggctcaacaaatccaagccagaaatcaaatgagataccag
caagctactgctgccgctgccgccgccgctgccggtatgccaggtcaattcatgcctcca
atgttctatggtgttatgccaccaagaggtgttccattcaacggtccaaacccacaacaa
atgaacccaatgggcggtatgccaaagaacggcatgccacctcaatttagaaatggtccg
gtttacggcgtccccccacaaggtggtttcccaagaaatgccaacgataacaaccaattt
tatcaacaaaagcaaagacaagctttgggtgaacaattatacaagaaggtttctgctaag
acttcaaatgaagaagcagctggtaaaattactggtatgattttggatttgccacctcaa
gaggtcttcccattgttggaaagtgatgaattgttcgaacaacactacaaagaagcttct
gctgcctatgagtctttcaaaaaggagcaagaacaacaaactgagcaagcttaa
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